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NBRP Genome Information Upgrading Program

2011.4 - 2012.3

Organism, etc	Focus	Implementing Organization (Researcher)	Web site
Rats
C. intestinalis/O. japonicus

2010.4 - 2011.3

Organism, etc	Focus	Implementing Organization (Researcher)	Web site
Mice	Completion of BAC end sequencing of the mouse C57BL/6N substrain	Experimental Animal Division, RIKEN BioResource Center (Atsushi Yoshiki)	RIKEN BRC DNA Mouse BAC browser DDBJ(GA000001 - GA131507)
Tomato	Sequence analysis of Micro-Tom sequencing	Gene Research Center, University of Tsukuba (Koh Aoki)
Japanese macaques	genome sequence of Japanese macaques	National Institute for Physiological Sciences (Tadashi Isa)
Medaka	Micro-Tom BAC end sequencing	National Institute for Basic Biology (Kiyoshi Naruse)

2009.4 - 2010.3

Organism, etc	Focus	Implementing Organization (Researcher)	Web site
Mice	BAC end sequencing of the mouse C57BL/6N substrain	Experimental Animal Division, RIKEN BioResource Center (Atsushi Yoshiki)	RIKEN BRC DNA Mouse BAC browser DDBJ (DH839446-DH961576)
Medaka	Full-length cDNA resources of Medaka fish	National Institute for Basic Biology (Kiyoshi Naruse)	NBRP Medaka
Wheat	Full-length cDNA resources of common wheat	Kihara Institute for Biological Research, Yokohama City University (Yasunari Ogihara)	RIKEN PSC
Tomato	Micro-Tom BAC end sequencing	Gene Research Center, University of Tsukuba (Erika Asamizu)	Kazusa DDBJ (FT227487-FT321168)

2008.4 - 2009.3

Organism, etc	Focus	Implementing Organization (Researcher)	Web site
Medaka	Full-length cDNA resources of Medaka fish	National Institute for Basic Biology (Kiyoshi Naruse)	NBRP Medaka
Rats	Rat LE/Stm BAC end sequencing	Institute of Laboratory Animals, Graduate School of Medicine, Kyoto University (Tadao Serikawa)	Rat Bac End DB RIKEN BRC DNA
Tomato	Enhancing tomato resources by sequencing Micro-Tom full-length cDNA	Kazusa DNA Research Institute (Koh Aoki)	KaFTom

2007.4 - 2008.3

Organism, etc	Focus	Implementing Organization (Researcher)	Web site
Medaka	Full-length cDNA resources of Medaka fish	National Institute for Basic Biology (Kiyoshi Naruse)	NBRP Medaka
Drosophila	Genome and property information for the quality control of Drosophila strains	Genetic Strains Research Center, National Institute of Genetics, Research Organization of Information and Systems (Ryu Ueda)	DGRC (Japan Drosophila Resources)
Arabidopsis	Sequence analysis of full-length cDNAs of Thellungiella halophila as new Arabidopsis resources	RIKEN BioResource Center (Masatomo Kobayashi)	RIKEN BRC
Wheat	Full-length cDNA resources of bread wheat	Kihara Institute for Biological Research, Yokohama City University (Yasunari Ogihara)	RIKEN PSC

2002- 2007.3

species	category	clone number	sequencing center	year funded	Web site	Distribution Center
Mice	MSM-BAC ends	ca. 200000	RIKEN	2002	NIG Mouse Genome Database	RIKEN BRC DNA
Mice	MSM-WGS	ca.1030000	RIKEN	2005	NIG Mouse Genome Database	-
Mice	MSM-WGS	ca.1300000	RIKEN	2006	NIG Mouse Genome Database	-
Mice	MSM-WGS	ca.1100000	NIG	2005	NIG Mouse Genome Database	-
Mice	MSM-WGS	ca.1300000	NIG	2006	NIG Mouse Genome Database	-
Mice	cDNA library, 4 strains, end sequencing	ca.80000	NIG	2006	NBRP NBRP Blast mouse BLAST	-
Rats	BAC libraries	2	RIKEN	2005	-	-
Rats	F344/Stm-BAC ends	ca.240000	RIKEN	2006	Rat Bac End DB DDBJ (DH508174-839445)	RIKEN BRC DNA
Medaka	WGS	ca.500000 reads	RIKEN	2002	NBRP Medaka Genome	-
Medaka	WGS	ca.500000 reads	NIG	2002	NBRP Medaka Genome	-
Xenopus	EST ends	ca.160000	NIG	2002	NBRP Xenopus Genome	RIKEN BRC DNA XDB
Xenopus	EST ends	ca.60000	NIG	2003	NBRP Xenopus Genome	RIKEN BRC DNA XDB
Drosohpila	BAC libraries	5	RIKEN	2002	-	-
Drosohpila	BAC ends	ca.45000	RIKEN	2003	DDBJ AG909574- AG981700	-
Drosohpila	EST libraries	5	NIG	2005	-	-
Drosohpila	EST ends	ca.100000	NIG	2005	DGRC (Japan Drosophila Resources	-
silkworm	EST ends	ca. 65000	NIG	2006	SilkBase	-
silkworm	sRNA	ca.20000	NIG	2006	DDBJ AB386191-AB424683	-
Japanese macaques	BAC libraries	1	RIKEN	2002	-	-
Japanese macaques	BAC ends	ca.80000	RIKEN	2003	Japanese macaque BAC browser DDBJ (AG613379-AG780537)	RIKEN BRC
Human	BAC	53	RIKEN	2002	-	RIKEN BRC
Wheat	EST ends	ca.100000	NIG	2002	KOMUGI	KOMUGI
Wheat	EST ends	ca.40000	NIG	2003	KOMUGI	KOMUGI
Wheat	full length cDNA	ca.4000	RIKEN	2003	RIKEN PSC	-
Wheat	BAC	15	RIKEN	2003	KOMUGI	-
Barley	EST ends	ca.40000	NIG	2003	BARLEY DB	-
Barley	cDNA	ca.5000 reads	NIG	2003	BARLEY DB	-
Arabidopsis/Cultured plant cells, genes	full length cDNA	ca.2400	NIG	2002	RIKEN BRC	RIKEN BRC
Arabidopsis/Cultured plant cells, genes	full length cDNA	ca. 6000	NIG	2003	RIKEN BRC	RIKEN BRC
Arabidopsis/Cultured plant cells, genes	full length cDNA	1678	RIKEN	2006	RIKEN BRC	RIKEN BRC
Glycine max	full length cDNA	2000	RIKEN	2005	RIKEN PSC	-
Glycine max	full length cDNA	2000	RIKEN	2006	RIKEN PSC	-
S. pombe	full length cDNA end sequences	ca.50000	NIG	2005	Yeast	Yeast
S. pombe	genomic DNA	-	NIG	2006	Yeast	Yeast