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NBRP Genome Information Upgrading Program

2016.9 - 2017.3 2015.10 - 2016.3 2014.4 - 2015.3 2012.4 - 2013.3 2011.4 - 2012.3 2010.4 - 2011.3 2009.4 - 2010.3 2008.4 - 2009.3 2007.4 - 2008.3 2002- 2007.3

Organism, etc Focus Implementing Organization (Researcher) Web site
2016.9 - 2017.3
Silkworms Genome Re-sequencing of Diverse Strains of Bombyx mori and B. mandarina (2) Toru Shimada
(The University of Tokyo)
Public Site on Project's Progress
Rats Whole genome resequencing of the representative rat strains and development of a SNP typing kit Mikita Suyama
(Kyushu University)
Public Site on Project's Progress
Mice Genome resequencing of Japanese wild mouse-derived MSM/Ms strain Toyoyuki Takada
(National Institute of Genetics)
Public Site on Project's Progress
Algae Genome sequencing project of heterocystous cyanobacteria in the NIES collection Yuu Hirose
(Toyohashi University of Technology)
Public Site on Project's Progress
2015.10 - 2016.3
Silkworms Genome Re-sequencing of Diverse Strains
of Bombyx mori and B. mandarina
The University of Tokyo
(Toru Shimada)
Public Site on Project's Progress
Drosophila Genome sequencing of diverse Drosophila
species (II)
Genetic Resource Center, National Institute
of Genetics
(Shu Kondo)
Public Site on Project's Progress
Mice Sequence and structure determination and
open to public of reference mouse genome
based on long one-molecule sequencing.
RIKEN BioResource Center
(Yoichi Gondo)
Public Site on Project's Progress
Lotus Generation of high quality genome sequence
of Gifu accession of Lotus japoncius to
accelerate NBRP resource application
Graduate School of Life Sciences, Tohoku
University
(Shusei Sato)
Public Site on Project's Progress
Pathogenic
microorganisms
Maintenance of whole genome sequences on
related species of Aspergillus fumigatus
Chiba University
(Takashi Yaguchi)
Public Site on Project's Progress
Rats Targeted genome resequencing of 20 strains
of the rats
Medical Institute of Bioregulation, Kyushu
University
(Mikita Suyama)
Public Site on Project's Progress
2014.4 - 2015.3
Rice Generation of genome sequence diversity information for wild relatives of rice Genetic Resource Center, National Institute of Genetics
(Nori Kurata)
Public Site on Project's Progress
General Microbes Genome sequencing of eukaryotic microorganisms of NBRP general microbes RIKEN BioResource Center
(Moriya Ohkuma)
Public Site on Project's Progress
Lotus Resequencing of the NBRP collected resources intended to upgrade the genome information of Lotus japonicus Graduate School of Life Sciences, Tohoku University
(Shusei Sato)
Public Site on Project's Progress
Drosophila Genome sequencing of diverse Drosophila species Genetic Resource Center, National Institute of Genetics
(Shu Kondo)
Public Site on Project's Progress
Organism, etc Focus Implementing Organization
(Researcher)
Web site
2012.4 - 2013.3
General microbes Genome sequencing of microbial strains for environmental and health science Microbe Division/Japan Collection of Microorganisms (JCM), RIKEN BioResource Center(Moriya Ohkuma) Public Site on Project's Progress
Pathogenic microorganisms Genome Sequencing of Opportunistic Pathogens GTC Genetic Resource Stock Center of Microbial Pathogens, Graduate School of Medicine, Gifu University (Takayuki Ezaki) Public Site on Project's Progress
Organism, etc Focus Implementing Organization
(Researcher)
Web site
2011.4 - 2012.3
Rats Whole genome sequencing of F344 rat Institute of Laboratory Animals, Graduate School of Medicine, Kyoto University (Tadao Serikawa) Whole Genome Sequencing of F344/Stm
C. intestinalis/O. japonicus Genome sequencing of the Ciona intestinalis inbred line Shimoda Marine Research Center, University of Tsukuba (Kazuo Inaba) KH inbred line 3A
KH inbred line 4B
Organism, etc Focus Implementing Organization
(Researcher)
Web site
2010.4 - 2011.3
Mice Completion of BAC end sequencing of the mouse C57BL/6N substrain Experimental Animal Division, RIKEN BioResource Center (Atsushi Yoshiki) RIKEN BRC DNA
Mouse BAC browser
DDBJ(GA000001 - GA131507)
Tomato Sequence analysis of Micro-Tom sequencing Gene Research Center, University of Tsukuba (Koh Aoki)
DDBJ (DRA000311)
Japanese macaques genome sequence of Japanese macaques National Institute for Physiological Sciences (Tadashi Isa) Japanese Monkey Genome Server (beta version)
DRA000589 (DRP000620)
DRA000626 (DRP000657)
Medaka Micro-Tom BAC end sequencing National Institute for Basic Biology (Kiyoshi Naruse)
medaka SNP(Beta)
Organism, etc Focus Implementing Organization
(Researcher)
Web site
2009.4 - 2010.3
Mice BAC end sequencing of the mouse C57BL/6N substrain Experimental Animal Division, RIKEN BioResource Center (Atsushi Yoshiki) RIKEN BRC DNA
Mouse BAC browser
DDBJ (DH839446-DH961576)
Medaka Full-length cDNA resources of Medaka fish National Institute for Basic Biology (Kiyoshi Naruse)
NBRP Medaka
Wheat Full-length cDNA resources of common wheat Kihara Institute for Biological Research, Yokohama City University (Yasunari Ogihara)
RIKEN PSC
KOMUGI
Tomato Micro-Tom BAC end sequencing Gene Research Center, University of Tsukuba (Erika Asamizu) Kazusa
DDBJ (FT227487-FT321168)
Organism, etc Focus Implementing Organization
(Researcher)
Web site
2008.4 - 2009.3
Medaka
Full-length cDNA resources of Medaka fish National Institute for Basic Biology (Kiyoshi Naruse)
NBRP Medaka
Rats Rat LE/Stm BAC end sequencing Institute of Laboratory Animals, Graduate School of Medicine, Kyoto University (Tadao Serikawa) Rat Bac End DB
RIKEN BRC DNA
Tomato Enhancing tomato resources by sequencing Micro-Tom full-length cDNA Kazusa DNA Research Institute (Koh Aoki)
KaFTom
Organism, etc Focus Implementing Organization
(Researcher)
Web site
2007.4 - 2008.3
Medaka Full-length cDNA resources of Medaka fish National Institute for Basic Biology (Kiyoshi Naruse)
NBRP Medaka
Drosophila Genome and property information for the quality control of Drosophila strains Genetic Strains Research Center, National Institute of Genetics, Research Organization of Information and Systems (Ryu Ueda) DGRC
(Japan Drosophila
Resources)
Arabidopsis
Sequence analysis of full-length cDNAs of Thellungiella halophila as new Arabidopsis resources RIKEN BioResource Center (Masatomo Kobayashi) RIKEN BRC
Wheat Full-length cDNA resources of bread wheat Kihara Institute for Biological Research, Yokohama City University (Yasunari Ogihara) RIKEN PSC
KOMUGI


species category clone number sequencing
center
year
funded
Public Site on Project's Progress Distribution
Center
2002- 2007.3
Mice MSM-BAC ends ca. 200000 RIKEN 2002 NIG Mouse Genome Database RIKEN BRC DNA
Mice MSM-WGS ca.1030000 RIKEN 2005 NIG Mouse Genome Database -
Mice MSM-WGS ca.1300000 RIKEN 2006 NIG Mouse Genome Database -
Mice MSM-WGS ca.1100000 NIG 2005 NIG Mouse Genome Database -
Mice MSM-WGS ca.1300000 NIG 2006 NIG Mouse Genome Database -
Mice cDNA library, 4 strains,
end sequencing
ca.80000 NIG 2006 NBRP
NBRP Blast
mouse BLAST
-
Rats BAC libraries 2 RIKEN 2005 - -
Rats F344/Stm-BAC ends ca.240000 RIKEN 2006 Rat Bac End DB
DDBJ (DH508174-839445)
RIKEN BRC DNA
Medaka WGS ca.500000 reads RIKEN 2002 NBRP Medaka Genome -
Medaka WGS ca.500000 reads NIG 2002 NBRP Medaka Genome -
Xenopus EST ends ca.160000 NIG 2002 NBRP Xenopus Genome RIKEN BRC DNA
XDB
Xenopus EST ends ca.60000 NIG 2003 NBRP Xenopus Genome RIKEN BRC DNA
XDB
Drosophila BAC libraries 5 RIKEN 2002 - -
Drosophila BAC ends ca.45000  RIKEN 2003 DDBJ 
AG909574-
AG981700
-
Drosophila EST libraries 5 NIG 2005 - -
Drosophila EST ends ca.100000 NIG 2005 DGRC (Japan Drosophila Resources -
silkworm EST ends ca. 65000 NIG 2006 SilkBase -
silkworm sRNA ca.20000 NIG 2006 DDBJ
AB386191-AB424683
-
Japanese macaques BAC libraries 1 RIKEN 2002 - -
Japanese macaques BAC ends ca.80000 RIKEN 2003 Japanese macaque BAC browser
DDBJ (AG613379-AG780537)
RIKEN BRC
Human BAC 53 RIKEN 2002 - RIKEN BRC
Wheat EST ends ca.100000 NIG 2002 KOMUGI KOMUGI
Wheat EST ends ca.40000 NIG 2003 KOMUGI KOMUGI
Wheat full length cDNA ca.4000 RIKEN 2003 RIKEN PSC -
Wheat BAC    15 RIKEN 2003 KOMUGI -
Barley EST ends ca.40000 NIG 2003 BARLEY DB -
Barley cDNA ca.5000 reads NIG 2003 BARLEY DB -
Arabidopsis/Cultured
plant cells,
genes
full length cDNA ca.2400 NIG 2002 RIKEN BRC RIKEN BRC
Arabidopsis/Cultured
plant cells,
genes
full length cDNA ca. 6000 NIG 2003 RIKEN BRC RIKEN BRC
Arabidopsis/Cultured
plant cells,
genes
full length cDNA 1678 RIKEN 2006 RIKEN BRC RIKEN BRC
Glycine max full length cDNA 2000 RIKEN 2005 RIKEN PSC -
Glycine max full length cDNA 2000 RIKEN 2006 RIKEN PSC -
S. pombe full length cDNA end
sequences
ca.50000 NIG 2005 Yeast Yeast
S. pombe genomic DNA - NIG 2006 Yeast Yeast
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